Toomas Mets "RNA fragmentation by MazF and MqsR toxins of Escherichia coli"

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View all other units

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Date:

10.05.2019 - 10:15

On Friday, 10 May at 10:15 Toomas Mets will defend his doctoral thsis "RNA fragmentation by MazF and MqsR toxins of Escherichia coli".

Juhendaja:
Senior Research Fellow, PhD Niilo Kaldalu

Opponent:
Professor, PhD Gerhart Wagner, Uppsala University, Sweden

Summary:
Lives of bacteria are full of perils: they have to cope with dangerous chemicals, hostile neighbours and limited nutrients. To counter various hazards, bacteria have developed many stress response mechanisms. Bacterial toxin-antitoxin systems are small parasitic modules, which have been in some cases also adopted into stress response pathways. These genetic units encode for an autotoxic protein and an antitoxin that neutralizes the toxin. Antitoxins are labile and need to be constantly produced to inhibit the extremely stable toxins. Thus, when the module is lost or antitoxin production gets hindered the toxins become free to inhibit the growth. Toxins involved in stress response are mainly considered to be regulators of growth, which reduce the metabolic activity of cells in response to harmful conditions. Recently, some toxin-antitoxin systems have been reported to have a more sophisticated function: the regulation of specific genes. The most prominent example is the MazF toxin of Escherichia coli, which is an endoribonuclease hypothesized to reprogram the translational machinery during various stresses. It is speculated that MazF removes a piece of the 3’ end from 16S rRNA in mature ribosomes, which results in altered translational specificity. Such modified ribosomes are thought to translate stress-related transcripts with truncated 5’ UTR-s, which are hypothesized to also be generated by MazF. We studied the RNA cleavage by MazF and another endoribonuclease toxin, MqsR, in Escherichia coli and saw no evidence for such elaborate translational reprogramming. Instead, we show that MazF and MqsR act as growth inhibitors, which cleave unstructured RNA. Traditionally, endoribonuclease toxins of Escherichia coli are viewed only as degraders of mRNA, but our data implies that growth arrest is also facilitated through degradation of precursor rRNA.

Organizer:

Niilo Kaldalu

Location:

Nooruse 1-121

URL:

dspace.ut.ee/handle/10062/63589

Event category:

Defence

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14 Toomas Toomsoo „Transcranial brain sonography in the Estonian cohort of Parkinson’s disease“ Full moon exploring session (in case the sky is clear) Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests”	15 Lidiia Zhytnik „Inter- and intrafamilial diversity based on genotype and phenotype correlations of Osteogenesis Imperfecta“ Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests”	16 Restart a heart day in Lossi 36 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests”	17 Karin Ernits „Levansucrase Lsc3 and endo-levanase BT1760: characterization and application for the synthesis of novel prebiotics” UT Professor in Developmental Biology Osamu Shimmi inaugural lecture “Cellular dynamics and signalling in tissue development: lessons from fruit fly Drosophila melanogaster” Astronomy seminar: The Research of This Year's Nobel Prize Winners and Their Connection to the UT Tartu Observatory Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests”	18 International seminar „Labour market integration on newly arrived immigrants“ Anni Rava „Associations between body composition, mobility and blood inflammatory biomarkers with physical activity in healthy older women“ Estonia's National University 100: "Book presentation “Academic Freedom: Studentdom of the University of Tartu through the ages” Estonia's National University 100: “One hundred faces of the University of Tartu” Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	19 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	20 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”
21 Sille Holm „Comparative ecology of geometrid moths: in search of contrasts between a temperate and a tropical forest“ Dagmar Narusson „Personaalset taastumist ja agentsust toetav klienditöö vaimse tervise ja sotsiaalse rehabilitatsiooni valdkonnas: vaimse tervise raskustega inimeste ja spetsialistide perspektiivid“ Mari Schihalejev „Debtor-Related Creditors’ Claims in Insolvency Proceedings“ Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	22 Pilleriin Soodla „Newly HIV infected people in Estonia: estimation of incidence and transmitted drug resistance“ Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	23 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	24 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	25 Anneliis Peterson „Benthic biodiversity in the north-eastern Baltic Sea: mapping methods, spatial patterns, and relations to environmental gradients“ Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	26 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	27 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”
28 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	29 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	30 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”	31 Exhibition “Tartu – Rendezvous of Cultures” Exhibition "The University of Tartu Main Building in Art" The Exhibition "The University of Tartu Main Building in Art" Exhibition dedicated to the Estonian national university “Estonia of Ideals. 100 Years of Quests” Estonia's National University 100: Photo exhibition “Put on Your Thinking Cap! The Hundred Faces of the University of Tartu”

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Toomas Mets "RNA fragmentation by MazF and MqsR toxins of Escherichia coli"

October